Seqera

Seqera integration (Data, Developer Tools). Imported from open-connector.

API key8 toolshttps://{api_base_url}

GET

seqera_get_current_user

Retrieve the current Seqera user profile and default workspace information.

/user-info

GET

seqera_list_user_workspaces

List the workspaces and organizations visible to the current Seqera user.

/user/{userId}/workspaces

1 parameter

Param	Type	Required	Description
userId	integer	required	The Seqera numeric user ID.

GET

seqera_get_workspace

Retrieve one Seqera workspace by organization ID and workspace ID.

/orgs/{orgId}/workspaces/{workspaceId}

2 parameters

Param	Type	Required	Description
orgId	integer	required	The Seqera numeric organization ID.
workspaceId	integer	required	The Seqera numeric workspace ID.

GET

seqera_list_pipelines

List Seqera pipelines in the current user context or a specific workspace.

/pipelines

8 parameters

Param	Type	Required	Description
workspaceId	integer	optional	The Seqera numeric workspace ID.
max	integer	optional	The maximum number of records to return.
offset	integer	optional	The zero-based offset of the first record to return.
sortBy	string	optional	The Seqera pipeline sort field.
sortDir	string	optional	The Seqera pipeline sort direction.
search	string	optional	A free-text search term used to filter pipelines.
visibility	string	optional	The visibility filter value used to filter pipelines.
attributes	array	optional	Additional pipeline attributes to include in the response.

GET

seqera_get_pipeline

Retrieve one Seqera pipeline by pipeline ID.

/pipelines/{pipelineId}

4 parameters

Param	Type	Required	Description
pipelineId	integer	required	The Seqera numeric pipeline ID.
workspaceId	integer	optional	The Seqera numeric workspace ID.
sourceWorkspaceId	integer	optional	The source workspace numeric ID used when resolving shared resources.
attributes	array	optional	Additional pipeline attributes to include in the response.

GET

seqera_list_workflows

List Seqera workflow runs in the current user context or a specific workspace.

/workflow

6 parameters

Param	Type	Required	Description
workspaceId	integer	optional	The Seqera numeric workspace ID.
max	integer	optional	The maximum number of records to return.
offset	integer	optional	The zero-based offset of the first record to return.
search	string	optional	A free-text search term used to filter workflows.
includeTotalSize	boolean	optional	Whether Seqera should include the total workflow count in the response.
attributes	array	optional	Additional workflow attributes to include in the response.

GET

seqera_get_workflow

Retrieve one Seqera workflow run by workflow ID.

/workflow/{workflowId}

3 parameters

Param	Type	Required	Description
workflowId	string	required	The Seqera workflow ID.
workspaceId	integer	optional	The Seqera numeric workspace ID.
attributes	array	optional	Additional workflow attributes to include in the response.

POST

seqera_launch_workflow

Launch a Seqera workflow from a pipeline repository or registered pipeline.

/workflow/launch

17 parameters

Param	Type	Required	Description
workspaceId	integer	optional	The Seqera numeric workspace ID.
sourceWorkspaceId	integer	optional	The source workspace numeric ID used when resolving shared resources.
pipeline	string	required	The pipeline repository name or URL to launch.
computeEnvId	string	optional	The compute environment ID used for the launch.
workDir	string	optional	The work directory configured for the workflow launch.
revision	string	optional	The Git revision used for the workflow launch.
runName	string	optional	The run name assigned to the workflow launch.
configProfiles	array	optional	The Nextflow config profiles applied to the launch.
paramsText	string	optional	The workflow parameters payload encoded as text.
configText	string	optional	Additional Nextflow config text applied to the launch.
mainScript	string	optional	The alternative main script path used for the launch.
entryName	string	optional	The Nextflow entry workflow name used for the launch.
pullLatest	boolean	optional	Whether Seqera should pull the latest pipeline revision before launching.
resume	boolean	optional	Whether Seqera should resume a compatible previous workflow execution.
stubRun	boolean	optional	Whether the workflow should run in Nextflow stub mode.
userSecrets	array	optional	The user secret names attached to the launch.
workspaceSecrets	array	optional	The workspace secret names attached to the launch.